High Performance Collision Cross Section Calculation – HPCCSLeandro MartinezDezembro 9, 2018Dezembro 10, 2018Dezembro 9, 2018Dezembro 10, 20180350High Performance Collision Cross Section Calculation – HPCCS The High Performance Collision Cross Section (HPCCS)...
TopoLink: A package to evaluate structural models using chemical crosslinking distance constraints.Leandro MartinezDezembro 8, 2018Dezembro 10, 2018Dezembro 8, 2018Dezembro 10, 20180249TOPOLINK is a package to compute topological distances between atoms on the surface of proteins...
MDLovoFit: Automatic identification of mobile and rigid substructure in protein dynamicsLeandro MartinezDezembro 8, 2018Dezembro 10, 2018Dezembro 8, 2018Dezembro 10, 20180251MDLovoFit is a package for the analysis of the mobility and structural fluctuation in Molecular...
LovoAlign: General molecular structural alignment packageLeandro MartinezDezembro 8, 2018Dezembro 10, 2018Dezembro 8, 2018Dezembro 10, 20180215LovoAlign is a new protein structural alignment package. The methods used for structural alignment are...
PGA: a Polyploid Gene Assemblercces ccesAbril 4, 2019Abril 4, 20191481PGA was developed using PERL scripts for running in Linux system and integrates various software...
Cellulose-builder: a toolkit for building crystalline structures of celluloseLeandro MartinezDezembro 9, 2018Abril 1, 2019Dezembro 9, 2018Abril 1, 20190450Cellulose-builder is a user-friendly program that builds crystalline structures of cellulose of different sizes and...
IIS – Integrated Interactome Systemcces ccesAbril 4, 2019Abril 8, 2019Abril 4, 2019Abril 8, 20190176A Web-Based Platform for the Annotation, Analysis and Visualization of Protein-Metabolite-Gene-Drug Interactions by Integrating a...
OmpCloud: Programming Cloud Clusters with OpenMPcces ccesNovembro 1, 2019Novembro 1, 2019Novembro 1, 2019Novembro 1, 2019034OmpCloud is a toolset that allows you to use the cloud as an OpenMP offloading...
Packmol: A package to build initial configurations for molecular dynamics simulationsLeandro MartinezDezembro 8, 2018Dezembro 10, 2018Dezembro 8, 2018Dezembro 10, 20180437PACKMOL creates an initial point for molecular dynamics simulations by packing molecules in defined regions...
PeNTIOS: a package for Petri Net simulation in Saccharomyces cerevisiaecces ccesAbril 4, 2019Abril 8, 2019Abril 4, 2019Abril 8, 20190156...
DNN-ROM: a software to construct reduced order models and fluid flowscces ccesAbril 16, 2019Maio 2, 2019Abril 16, 2019Maio 2, 20190518...